BrainBeacon

🧠 A cross-species foundation model for single-cell–resolved brain spatial transcriptomics

BrainBeacon is a foundation model pretrained on large-scale brain spatial transcriptomics data across species and platforms. It provides unified embeddings for downstream tasks such as cell type annotation, clustering, cross-species alignment, and in-silico perturbation.

Note

BrainBeacon is designed to support multi-species and multi-platform spatial transcriptomics analysis with a unified tokenization and modeling pipeline.