🧠A cross-species foundation model for single-cell–resolved brain spatial transcriptomics
BrainBeacon is a foundation model pretrained on large-scale brain spatial transcriptomics data across species and platforms. It provides unified embeddings for downstream tasks such as cell type annotation, clustering, cross-species alignment, and in-silico perturbation. ```{note} BrainBeacon is designed to support multi-species and multi-platform spatial transcriptomics analysis with a unified tokenization and modeling pipeline. ``` ```{toctree} :hidden: true :maxdepth: 1 installation api/index notebooks/index references ```