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BrainBeacon
Installation
API
Cell Embedding
brainbeacon.pipeline.cell_embedding.run_bbcellformer_pipeline
Cell Label Transfer
brainbeacon.pipeline.cell_label_transfer.run_label_transfer_pipeline
In silico Perturbation
brainbeacon.pipeline.perturbation.apply_gene_perturbation
brainbeacon.pipeline.perturbation.inject_cells_into_niche
Tutorials
Cell Embeddings with BrainBeacon
Label Transfer from Macaque snRNA-seq to Macaque Stereo-seq
Label Transfer from Macaque snRNA-seq to Human Stereo-seq
Gene-driven Perturbation (GNP) Knockout Simulation
Gene-driven Perturbation (GNP) Overexpression Simulation
Cell-driven Niche Perturbation (CNP) Injection Simulation
Cell-driven Niche Perturbation (CNP) Replacement Simulation
References
.md
.pdf
API
API
#
Cell Embedding
Cell Label Transfer
In silico Perturbation