In silico Perturbation

In silico Perturbation#

apply_gene_perturbation(adata, gene_list[, ...])

Apply gene perturbation (knockout or overexpress) to selected cells in an AnnData.

inject_cells_into_niche(target_adata, ...[, ...])

Inject donor cells into the spatial niche of target cells by assigning donor coordinates near randomly selected target cells.